Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KICH | rs74790743 | chr14:91790337 | A/C | 4.62E-6 | 64 | 66.78 | 67.1 | 26.33 | KM Plot |
| KICH | rs75386326 | chr1:84179988 | G/A | 1.26E-6 | 63 | 65.47 | 26.27 | 20.75 | KM Plot |
| KICH | rs75626299 | chr9:29426599 | C/G | 7.93E-7 | 62 | 68.8 | 41.22 | 16.9 | KM Plot |
| KICH | rs75707701 | chr2:137092055 | T/A | 8.84E-7 | 64 | 65.47 | 64.87 | 20.75 | KM Plot |
| KICH | rs75873078 | chr2:43825299 | G/C | 5.91E-8 | 63 | 63.23 | 126.88 | 19.67 | KM Plot |
| KICH | rs76032550 | chr1:85880540 | T/G | 8.92E-7 | 64 | 67.47 | 60.5 | 20.75 | KM Plot |
| KICH | rs76164405 | chr2:134357661 | G/A | 6.57E-7 | 64 | 66.78 | 57.97 | 16.9 | KM Plot |
| KICH | rs76260879 | chr13:77310724 | T/C | 5.63E-7 | 64 | 64.83 | 60.8 | 16.9 | KM Plot |
| KICH | rs76563727 | chr9:79128873 | T/C | 5.98E-7 | 64 | 64.83 | 74.83 | 16.9 | KM Plot |
| KICH | rs76671270 | chr16:27179970 | C/T | 4.67E-7 | 63 | 68.13 | 36.03 | 16.9 | KM Plot |
| KICH | rs76711495 | chr1:85880859 | G/A | 8.92E-7 | 64 | 67.47 | 60.5 | 20.75 | KM Plot |
| KICH | rs77275603 | chr12:6849711 | C/G | 1.11E-6 | 62 | 64.67 | 64.83 | 16.9 | KM Plot |
| KICH | rs7745870 | chr6:88069268 | C/T | 6.56E-5 | 65 | 66.15 | 17.28 | 66.1 | KM Plot |
| KICH | rs77552263 | chr2:43786818 | G/A | 5.91E-8 | 63 | 63.23 | 126.88 | 19.67 | KM Plot |
| KICH | rs77972916 | chr2:43762112 | G/A | 5.91E-8 | 63 | 63.23 | 126.88 | 19.67 | KM Plot |